Mouse Opti-XXPress / EDx Profiles

  SampleType Prevalent  Basic Comprehensive Global
Bacteria - Respiratory

Pasteurella pneumotropica Heyl / Rodentibacter heylii

F, DOS, E

 •

Pasteurella pneumotropica Jawetz / Rodentibacter pneumotropicus

F, DOS, E  • •  • 

Mycoplasma pulmonis

F, DOS, E   •  • 

Staphylococcus aureus

F, DOS, E    

Streptococcus β-hemolytic (Group A, B, C, D)

F, DOS, E     •  • 

Bordetella bronchiseptica

F, DOS, E       • 

Bordetella hinzii / pseudohinzii

F, DOS, E       • 

Corynebacterium kutscheri

F, DOS, E       • 
Streptobacillus moniliformis F, DOS, E       • 
Streptococcus pneumoniae F, DOS, E       • 

Cilia-associated respiratory bacillus (CARB) / Filobacterium rodentium

F, DOS, E       • 
Bacteria - Enteric

Helicobacter spp. H.bilis, H.ganmani, H.hepaticus, H.mastomyrinus,H.rodentium, H.typhlonius

F, E  •  •  • 
Klebsiella oxytoca F, E   •  •  • 
Klebsiella pneumoniae F, E  
Salmonella spp. F, E   •  • 
Citrobacter rodentium F, E     • 
Clostridium piliforme F, E     •  • 
Pseudomonas aeruginosa F, E    
Campylobacter spp. F, E      
Proteus mirabilis F, E      
Bacteria - Skin
Corynebacterium bovis FS, E       • 
Staphylococcus xylosus FS, E      
Fungi
Pneumocystis spp. DOS, E      
Viruses
MHV F, E
MVM F, E
MPV (1-5) F, E
MNV F, E
TMEV F, E
MRV/EDIM F, E
MAV1, MAV2 F, E    
Mouse Kidney Parvovirus (MKPV)  F, E       
REO 1, 2 and 3 F, E      
PVM F, E      
Sendai virus (SEND) F, E      
Ectromelia F, E      
Hantaan virus F, E      
Lymphocytic choriomeningitis virus (LCMV) F, E      
Parasites/Protozoa

Pinworm (Syphacia obvelata, Syphacia muris, Aspiculuris tetraptera)

F, E

Fur Mite (Myocoptes, Myobia and Radfordia spp.)

FS, E
Spironucleus muris F, E
Entamoeba muris F, E
Tritrichomonas muris F, E    
Cryptosporidium spp. F, E      
Giardia spp. F, E      
Demodex F, E       
Ornithonyssus FS, E, F        

 Legend: F – Feces      FS – Fur swab      OS – Oral swab       L – Lung       E- Environmental           

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Rat Opti-XXPress / EDx Profiles

  Sample Type
Prevalent Basic Comprehensive  Global
Bacteria - Respiratory

Pasteurella pneumotropica Heyl / Rodentibacter heylii

F, DOS, E

 •

Pasteurella pneumotropica Jawetz / Rodentibacter pneumotropicus

F, DOS, E

 • •  • 

Mycoplasma pulmonis

F, DOS, E

  •  • 

Streptococcus, β-hemolytic (Groups A, B, C, D)

F, DOS, E

    •  • 
Bordetella bronchiseptica

F, DOS, E

    • 
Corynebacterium kutscheri

F, DOS, E

      • 
Streptobacillus moniliformis

F, DOS, E

      • 
Streptococcus pneumoniae

F, DOS, E

      • 

(CARB) / Filobacterium rodentium

F, DOS, E

      • 
Bacteria - Enteric

Helicobacter spp. H.bilis, H.ganmani, H.hepaticus, H.mastomyrinus,H.rodentium, H.typhlonius

F, E

 • •  •  • 
Klebsiella oxytoca

F, E

  •  • 
Klebsiella pneumoniae

F, E

  • 
Salmonella spp.

F, E

 
Clostridium piliforme

F, E

    •  • 
Pseudomonas aeruginosa

F, E

    •  • 
Campylobacter spp.

F, E

     
Proteus mirabilis

F, E

     
Bacteria - Skin
Staphylococcus xylosus

FS, F

      • 
Fungi
Pneumocystis spp.

DOS, E

     
Viruses
RCV/SDAV

F, E

 •
RPV

F, E

KRV

F, E

RMV

F, E

H-1

F, E

RTV

F, E

BCV

F, E

   
MAV1, MAV2

F, E

   
REO 1, 2 and 3

F, E

     
PVM

F, E

     
Sendai virus (SEND)

F, E

     
Seoul virus

F, E

     
Parasites

Pinworm (Syphacia obvelata, Syphacia muris, Aspiculuris tetraptera)

F, E

Fur Mite (Myocoptes, Myobia and Radfordia spp.)

FS, E

Spironucleus muris F, E
Entamoeba muris F, E
Tritrichomonas muris F, E    
Cryptosporidium spp. F, E      
Giardia spp. F, E      
Demodex F, E      
Ornithonyssus

FS, F, E

       

Legend: F – Feces      FS – Fur swab      OS – Oral swab       L – Lung      E- Environmental  

 

Individual PCR Assays and Preferred Specimen Type

Agent

Preferred Specimen Type (italics = postmortem sample)

Species
Viruses

Boone cardiovirus (BCV)

F, E

Rat

Ectromelia virus (mouse poxvirus)

F, E, skin lesion

Mouse

Guinea pig adenovirus (GAV)

F, E, OS, lung

Guinea Pig

Guinea pig cytomegalovirus (GPCMV)

F, spleen, salivary gland

Guinea Pig

Hamster parvovirus (HaPV)

F, MLN

Hamster

Hamster polyomavirus

F, E, lesioned organs

Hamster

Hantaan virus

F, E, kidney

Mouse, rat, guinea pig, hamster

K virus (Mouse pneumotropic virus)

F, E, MLN

Mouse

Kilham's rat virus (KRV)

F, E, MLN, spleen

Rat

Lactate dehydrogenase-elevating virus (LDEV)

serum, spleen

Mouse

Lymphocytic choriomeningitis virus (LCMV)

F, E, kidney

Mouse

Minute virus of mice (MVM)

F, E, MLN, spleen

Mouse

Mouse adenovirus 1 (MAV1)  F, E, MLN Mouse
Mouse adenovirus 2 (MAV2)  F, E, intestine Mouse
Mouse cytomegalovirus 1 (mCMV1)  F, E, spleen, salivary gland Mouse
Mouse cytomegalovirus 2 (mCMV2)  F, E, spleen, salivary gland Mouse
Mouse hepatitis virus (MHV)  F, E, MLN Mouse
Mouse Kidney Parvovirus (MKPV)   F, E, kidney Mouse
Mouse parvovirus (MPV)  F, E, MLN, spleen Mouse
Mouse rotavirus (EDIM)  F, E Mouse
Mouse thymic virus (MTV)   F, E, OS, salivary gland Mouse

Murine astrovirus 1 (MuAstV1)

 F, E Mouse
Murine norovirus (MNV)  F, E Mouse
Murine polyomavirus  F, E, skin Mouse
Pneumonia virus of mice (PVM)  F, E, OS, lung Mouse
Rat coronavirus (RCV)/Sialodacryoadenitis virus (SDAV)  F, E, OS, Harderian gland Rat
Rat cytomegalovirus1 (rCMV1)  F, E, OS, salivary gland Rat
Rat cytomegalovirus2 (rCMV2)  F, E, OS, salivary gland Rat
Rat minute virus (RMV)  F, E, MLN, spleen Rat
Rat parvovirus (RPV)  F, E, MLN, spleen Rat
Rat polyomavirus 2 (RPyV2)  F, E, OS Rat
Rat rotavirus (IDIR)  F, E Rat
Rat theilovirus (RTV) F, E, intestine Rat
Respiratory enteric orphan virus 1, 2 and 3 (REO1, 2 and 3) F, E, intestine 

Mouse, rat, guinea pig, hamster

Sendai virus (SEND)  F, E, OS, lung

Mouse, rat, guinea pig, hamster

Seoul virus  F, E, kidney

Mouse, Rat

Sin Nombre virus  F, E, kidney

Mouse

Theiler's murine encephalomyelitis virus (TMEV)  F, E

Mouse

Toolan's H-1 virus (H-1)  F, E, MLN, spleen Rat
Bacteria
Bordetella bronchiseptica  F, E, OS, trachea

Mouse, guinea pig, rat, rabbit

Bordetella hinzii; Bordetella pseudohinzii  F, E, OS, trachea  Mouse

Citrobacter rodentium

 F, E, colon Mouse, rabbit

Clostridium piliforme (Tyzzer’s disease)

 F, E

Mouse, rat, rabbit

Corynebacterium bovis

 F, E, fur swab

Mouse, rat

Corynebacterium spp. (HAC2)

 F, E, fur swab Mouse

Corynebacterium kutscheri

 F, E, OS

Mouse, hamster, rat

Cilia-associated respiratory bacillus (CARB) / Filobacterium rodentium

 F, E, OS, trachea

Mouse, rat, rabbit

Helicobacter spp.  F, E

Mouse, guinea pig, rabbit, rat

Helicobacter bilis  F, E

Mouse, rabbit, rat

Helicobacter ganmani  F, E  Mouse, rabbit, rat
Helicobacter hepaticus F, E  Mouse, rabbit, rat
Helicobacter mastomyrinus  F, E 

Mouse, rabbit, rat

Helicobacter rodentium F, E 

Mouse, rabbit, rat

Helicobacter typhlonius  F, E  Mouse, rabbit, rat
Klebsiella oxytoca  F, E

Mouse, rat

Klebsiella pneumoniae  F, E Mouse, rat
Lawsonia intracellularis  F, E Mouse, guinea pig, hamster, rat
Mycoplasma pulmonis  F, E, OS  Mouse, rat
Pasteurella multocida  F, E, OS Rat
Proteus mirabilis  F, E Mouse, guinea pig, hamster, rat
Pseudomonas aeruginosa  F, E Mouse, rat

Pasteurella pneumotropica Heyl / Rodentibacter heylii

 F, E, OS Mouse, rat

Pasteurella pneumotropica Jawetz /Rodentibacter pneumotropicus

 F, E, OS Mouse, rat
Salmonella enterica  F, E Mouse, guinea pig, hamster, rabbit, rat
Segmented filamentous bacterium  F, E Mouse
Staphylococcus aureus  F, E, OS, FS/SS Mouse, rat
Staphylococcus xylosus  F, E, OS, FS/SS Mouse, rat
Streptobacillus moniliformis  F, E, OS Mouse, rat
Streptococcus, β-hemolytic  F, E, OS Mouse, rat
 Streptococcus pyogenes (Group A) F, E, OS  Mouse, rat
 Streptococcus agalactiae (Group B) F, E, OS  Mouse, rat
Streptococcus equi subsp. zooepidemicus (Group C) F, E, OS  Mouse, rat
Streptococcus canis (Group G) F, E, OS  Mouse, rat
Streptococcus pneumoniae F, E, OS Mouse, rat
Treponema paraluis-cuniculi Genital swab Rabbit
Fungi
Encephalitozoon cuniculi F, kidney

Mouse, guinea pig,hamster, rabbit, rat

Pneumocystis spp. F, E, OS, lung

Mouse, rat

Endoparasites
Aspiculuris tetraptera F, E

Mouse, rat

Chilomastix spp. F, E

Mouse, rat

Cryptosporidium spp. F, E

Mouse, rat

Eimeria spp. F, E

Rabbit

Entamoeba muris F, E

Mouse, rat

Giardia muris F, E

Mouse, rat

Hymenolepis diminuta F, E

Mouse, rat

Rodentolepis nana F, E

Mouse, rat

Spironucleus muris F, E

Mouse, rat

Syphacia muris F, E

Mouse, rat

Syphacia obvelata F, E

Mouse, rat

Tritrichomonas muris F, E

Mouse, rat

Ectoparasites
Demodex musculi FS, E, F

Mouse

Myocoptes musculinus FS, E, F

Mouse

Ornithonyssus spp. FS, E, F

Mouse, rat

Radfordia affinis/Radfordia ensiphera/Myobia musculi FS, E, F

Mouse, rat

Legend: F – Feces   E- Environmental sample   FS – Fur swab   MLN - Mesenteric lymph node   OS – Oral swab   SS - skin swab    WF - whole fish       

 

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Aquatic Pathogens

  Zebrafish Amphibians
Batrachochytrium dendrobatidis   SS, E, skin
Batrachochytrium salamadrivorans   SS, E, skin
Cryptosporidium spp.   F, stomach
Edwardsiella ictaluri WF, E  
Flavobacterium columnare WF SS, E, skin
Ichthyophthirius multifiliis WF  
ISKNV (Infectious Spleen and Kidney Necrosis Virus) WF, E  
Mycobacterium abscessus WF, E  
Mycobacterium chelonae WF, E pooled viscera, E
Mycobacterium fortuitum WF, E  
Mycobacterium gordonae WF, E pooled viscera, E
Mycobacterium haemophilum WF, E  
Mycobacterium marinum WF, E pooled viscera, E
Mycobacterium peregrinum WF, E  
Mycobacterium saopaulense WF, E  
Myxidium streisingeri WF, E  
Piscinoodinium pillulare WF SS, skin
Pleistophora hyphessobryconis WF  
Pseudocapillaria tomentosa WF, E  
Pseudocapillaroides xenopi   SS, E, skin
Pseudoloma neurophilia WF  
Pseudomonas aeruginosa   F, SS, E
Ranavirus spp.   F, cloacal swab, tissue
Salmonella spp.   F
Zebrafish picornavirus NEW! WF  

Legend: F – Feces   E- Environmental sample   FS – Fur swab   MLN - Mesenteric lymph node   OS – Oral swab   SS - skin swab    WF - whole fish